PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_151970_gufi.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 441aa    MW: 47595.8 Da    PI: 4.8172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_151970_gufi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11260302754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Bv6_151970_gufi.t1 260 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYMKEL 302
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16256325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9259302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-14259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16260318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-13260307No hitNo description
PROSITE profilePS516719.17369441IPR002912ACT domain
CDDcd048733.68E-7370430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLSRPDGVVW LDNDVTDQND TVSWSSTTRQ VPSIDGGGGD WFLTGSNIIN PPPLEVGNDN  60
LVLPSTLQTT SSSSFFPFST FNNFSPDPGF LNPVQPGSGL ELSGFGSSGL EGLDPSSQDL  120
VFFNNRGPSS FGPVPVEPTL FQKWAMNRNG PDKLGGSGGG GGGGGICWGR GKRKRSNDEE  180
DEDEVEGSFG VSMVNYDSDE LNDDGCDNYN NNNNSNSNNN NSNSNVDDEK FLNSLGTGGG  240
SGGGGGGKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYMK  300
ELLQRISDLH NELESSNHSS MMPPSSQPPT PITHSFPCRV KEELSPNSLP PKNQPARIEV  360
RNKEGRAVNI HMFCARRPGL LLSTLRALDN LGLDIQQAVI SCFNGFALDI FQAEQCREGN  420
EVLPEQIKAV LLDSAGFHGV I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249267KKKGLPAKNLMAERRRRKK
2261268ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682978.10.0PREDICTED: transcription factor ICE1
RefseqXP_010682979.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-102ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0J8EUJ30.0A0A0J8EUJ3_BETVU; Uncharacterized protein
STRINGPOPTR_0012s10780.11e-111(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-92bHLH family protein